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WORLD INTELLECTUAL PROPERTY ORGANIZATION 
Internationa] Bureau 




PCT 

INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) 



(51) International Patent Classification 6 : 
G01N 21/64, 15/14 



Al 



(11) International Publication Number: WO 99/60383 

(43) International Publication Date: 25 November 1999 (25. 11 .99) 



(21) International Application Number: PCT/US997 10874 

(22) International Filing Date: 17 May 1999 (17.05.99) 



(30) Priority Data: 

6XV085,545 



15 May 1998 (15.05.98) 



US 



(71) Applicant (for all designated States except US): FLUORRX, 

INC. [US/US]; 979 Keystone Way, Carmel, IN 46032 (US). 

(72) Inventor; and 

(75) Investor/Applicant (for US only): SZMACINSKI, Henryk 
[P1VUS]; 979 Keystone Way, Carmel, IN 46032 (US). 

(74) Agent: KENEMORE, Max; FluorRx, Inc., 979 Keystone Way, 
Carmel, IN 46032 (US). 



(81) Designated States: CA, JP, US, European patent (AT, BE, CH, 
CY, DB, DK, ES, FI, FR, GB, GR, IE, IT, LU, MC, NL, 
PT, SE). 



Published 

With international search report 



(54) Title: IMPROVED PHASE ANGLE AND MODULATION OF FLUORESCENT ASSAY 
(57) Abstract 

The presence or concentration of analytes in a sample can be assayed by observing with fluorescent lifetime techniques such as 
phase angle shift and modulation change the combined response to excitation of a fluorescent probe in the presence of the sample and a 
fluorescent material, the probe having a fluorescence intensity response to the presence or concentration of the analyte, the probe and the 
material having no substantial fluorescence lifetime change in response to the presence or concentration of the analyte and the material 
having a fluorescence lifetime m response to excitation that is different from the fluorescence lifetime of the probe. 



FOR THE PURPOSES OF INFORMATION ONLY 



Codes used to identify States party to the PCT on the front pages of pamphlets publishing international applications under the PCX 



AL 


Albania 


BS 


Spain 


LS 


Lesotho 


SI 


Slovenia 


AM 


Armenia 


FI 


Finland 


LT 


Lithuania 


SK 


Slovakia 


AT 


Austria 


FR 


France 


LU 


Luxembourg 


SN 


Senegal 


AU 


Australia 


GA 


Gabon 


LV 


Latvia 


sz 


Swaziland 


AZ 


Azerbaijan 


GB 


United Kingdom 


MC 


Monaco 


TD 


Chad 


BA 


Bosnia and Herzegovina 


GB 


Georgia 


MD 


Republic of Moldova 


TG 


Togo 


BB 


Barbados 


GH 


Ghana 


MG 


Madagascar 


TJ 


Tajikistan 


BE 


Belgium . . 


GN 


Guinea 


MK 


The former Yugoslav 


TM 


Turkmenistan 


BF 


Burkina Faso 


GR 


Greece 




Republic of Macedonia 


TR 


Turkey 


BG 


Bulgaria 


HU 


Hungary 


ML 


Mali 


TT- 


Trituoad and Tobago 


BJ 


Benin 


IB 


Ireland 


MN 


Mongolia 


UA 


Ukraine 


BR 


Brazil 


IL 


Israel 


MR 


Mauritania 


UG 


Uganda 


BY 


Belarus 


IS 


Iceland 


MW 


Malawi 


US 


United States of America 


CA 


Canada 


IT 


Italy 


MX 


Mexico 


uz 


Uzbekistan 


CF 


Central African Republic 


JP 


Japan 


NR 


Niger 


VN 


Viet Nam 


CG 


Congo 


KB 


Kenya 


NL 


Netherlands 


YU 


Yugoslavia 


CH 


Switzerland 


KG 


Kyrgyzstan 


NO 


Norway 


ZW 


Zimbabwe 


a 


Cote d'rvoire 


KP 


Democratic People's 


NZ 


New Zealand 






CM 


Cameroon 




Republic of Korea 


PL 


Poland 






CN 


China 


KR 


Republic of Korea 


PT 


Portugal 






CU 


Cuba 


KZ 


KspJcstto 


RO 


Romania 






CZ 


Czech Republic 


tc 


Saint Lucia 


RU 


Russian Federation 






DB 


Germany 


U 




SD 


Sudan 






DK 


Denmark 


LK 


Sri Lanka 


SB 


Sweden 






EE 


Estonia 


LR 


Liberia 


SG 


Singapore 







WO 99/60383 



PCT/US99/10874 



Title 



IMPROVED PHASE ANGLE AND MODULATION OF FLUORESCENT ASSAY 



10 



15 



20 



25 



1 



WO 99/60383 



PCT/US99/10874 



Description 

5 At present, there is considerable interest and 

research activity in the field of chemical sensing. 
Rapid and continuous monitoring of many analytes { pH, 
pC0 2 , 0 2 , metal ions, etc.) Is required in many areas of 
science, including analytical chemistry, biochemistry, 

10 environmental sensing, clinical chemistry and industrial 
applications. Fluorescence-based sensing is one of the 
promising techniques because of fluorescence 
sensitivity, providing number of sensitive and specific 
fluorescent probes for a variety of analytes and their 

15 fabrication with fiber optics. 

At present, most types of commercial fluorescence 
sensing devices are .based on the standard intensity- 
* based methods, in which the intensity of the 
fluorescence produced by the probe molecule changes in 

20 response to the analyte of interest. These intensity 
changes can be induced by an analyte due to changes in 
extinction coefficient, changes in quantum yield, 
absorption and emission spectral shifts, or simply due 
to the inner filter effects. While intensity 

25 measurements are simple and accurate in the laboratory, 
they are often inadequate in real-world situations. This 
is because the sample may be turbid, the optical 
surfaces may be imprecise and become dirty and optical 
alignment may vary from sample to sample. A significant 

30 disadvantage of intensity based sensing is the problem 
of referencing the intensity measurements. The 



WO 99/60383 PCT/US99/10874 

fluorescence intensity measurement depends on the 
intensity of exciting light, the optical density at the 
excitation and emission wavelengths, the light loses in 
the optical path length, detector sensitivity and the 

5 concentration of the fluorophore. These difficulties 
with intensity-based sensing appear to be limiting the 
more widespread use of fluorescence for quantitative 
chemical sensing. 

Recent advances in optoelectronic have now made 

10 possible a new type of fluorescence sensing. Instead of 
fluorescence intensities it is possible to measure 
fluorescence lifetime, particularly by the phase 
modulation method with a simple light sources. The 
advantages of lifetime-based sensing and the for a 

15 several mechanisms of analyte-induced changes in 
lifetime are reviewed elsewhere in detail (Szmacinski 
and Lakowicz, Topics in Fluorescence Spectroscopy, Vol 
4, pp. 295-334, Plenum Press, New York 1994) . The 
preferred lifetime-based sensing technique is phase- 

20 modulation, where analyte-induced changes in lifetime of 
the probe are measured by phase angle and modulation at 
single modulation frequency. The phase and modulation 
are related to the analyte concentration. A number of 
lifetime-sensitive probes have been characterized for 

25 several analytes such as pH, Ca 2+ , Mg 2 *, K*, Na + . 
Practically all of the known analyte lifetime-sensitive 
probes excluding the probes for 0 2 sensing display short 
lifetimes, most often in the range of 1- 5 ns. Using 
probes with short lifetimes requires high modulation 

30 frequencies in the range of 50 - 300 MHz in order to 
obtain sufficient changes in phase and modulation for 

3 



I 



WO 99/60383 PCT/US99/ 10874 

analyte sensing. However, even though inexpensive light 
sources such as LED' s can be modulated in that range of 
frequencies, the cost of phase modulation device is 
. still sufficiently expensive to inhibit broad commercial 
5 use. 

There is observed a significant effort in several 
laboratories to develop functional long lifetime probes 
having a fluorescence lifetime in the range above 100 
ns. There is a large number of fluorophores that display 

10 long lifetime fluorescence, such as metal-ligand 

complexes based on ruthenium, rhenium, osmium, platinum 
or rhodium. Lifetimes as long as 100 yis can be obtained 
using such probes . However, there are not known such 
metal-ligand complex-based probes that are sufficiently 

15 sensitive to analytes for practical use. Only 0 2 probes 
based on metal-ligand complexes in which the mechanism 
of quenching is exploited are presently used widely. 
The advantage of longer lifetime probes is that sensing 
can be at a relatively lower modulation frequency, for 

20 example, in '.the range . of 10-1000 kHz. A phase and/or 
modulation instrument based on the use of longer 
lifetime fluorescent materials, such as the metal-ligand 
complex based materials can be designed to use 
inexpensive components due mainly to the lower 

25 frequencies required. 

It is among the objects of the present invention to 
.;■ overcome the disadvantages of the present technology. 

It is one object to avoid the need for development 
and manufacture of relatively exotic long lifetime 

30, fluorescent materials such as those based on metal- 
ligand complexes. 

4 



WO 99/60383 PCT/US99/1 0874 

It is another object of this invention to avoid the 
need for the use of high frequencies in phase-modulation 
assays, so that relatively less expensive lower 
frequency electronic components can be used. 
5 It is yet another object of this invention is to 

measure phase and modulation in the low modulation 
frequencies using available (or designed) fluorophores 
in which the intensity is sensitive to the analyte of 
interest . 

10 It is a further object of this invention to avoid 

the problems encountered in the past with intensity- 
based fluorescent assays due to ambient light, turbidity 
in the sample, the need for optical couplings, intensity 
dissipated in wave guides, and the like. 

15 These and other objects are accomplished by the 

present invention, which makes use of the discovery that 
relatively low frequency phase and modulation techniques 
can be used to assay for analytes by employing, in 
combination, a fluorescent probe that shows a 

20 fluorescent intensity response in the presence of the 
analyte but has a fluorescent lifetime that is 
substantially unaffected by the presence of the analyte 
and a fluorescent material having a fluorescent lifetinie 
that is different from the fluorescent lifetime of the 

25 probe, the fluorescent material being substantially 
unaffected in both fluorescence lifetime and 
fluorescence intensity by the presence of the analyte. 

Although the mechanism by which this invention 
works is not fully understood at the present time, it is 

30 believed' that the phase angle and modulation of the 
sample depend on values of lifetime and fractional 

•5 



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PCI7US99/10874 



intensities of components . The changes in phase angle 
and modulation can be as result of changes in fractional 
intensities without changes in the lifetime of both 
component. By mixing an analyte sensitive fluorophore 
5 (short lifetime or long lifetime) with the second 
fluorophore that is not analyte sensitive (long lifetime 
or short lifetime) and by correctly selecting the 
relative concentration of the f luorophores, the 
excitation wavelength, and the emission band observed, 

10 an analyte sensitive probe can be created. The expected 
analyte induced changes in phase angle and modulation 
can be as large as 90 degree and 1.0, respectively. To 
observe large changes in phase angle and modulation the 
modulation frequency can be at a lower range, determined 

15 by the long lifetime component. 

The controlled mixing of two fluorophores allows 
using any intensity-based fluorophore regardless of its 
lifetime as a lifetime-based probe using a phase and 
modulation technique. The analyte-induced changes in 

20 fractional intensities of two components allow the 
determination of the, analyte concentration from the 
phase and/or modulation at a single modulation 
frequency. 

The properties, requirements, ri . advantages and 
25 various applications of the present- invention are 
discussed below with reference to the drawings.- 

Brief Description of the Drawings 



Figs, la and Fig. lb show the expected frequency 
responses of phase angle and modulation for long 

6 



WO 99/60383 PCT/US99/10874 

lifetime and short lifetime f luorophores . 

Fig. 2a and Fig 2b show the expected frequency 
responses of phase angle and modulation of fluorescence 
that consist of fraction of long lifetime and fraction 
5 the short lifetime fluorescence. 

Fig. 3a and Fig. 3b show the expected frequency 
responses of phase angle and modulation where the value 
of short lifetime is changed from 0.5 to 10 ns in 
several steps. 

10 Fig. 4a and Fig 4b show the expected frequency 

responses of phase angle and modulation where the value 
of long lifetime is 100, 500, and 5000 ns and short 
lifetime fluorescence of 10 ns. 

Figs. 5a, 5b, 6 and 7 illustrate Example 1. 
15 Figs. 8, 9 and 10 illustrate Example 2. 

Figs. 11, 12, 13, 14 and 15 illustrate Example 3. 

Detailed Description 

Referring again to Figs, la and lb, two distinct 
20 ranges of modulation frequencies are needed to measure 
the short lifetime and to measure long lifetime 
fluorescence. In order to measure the lifetimes shorter 
than 5 ns that display most of organic f luorophores, 
high modulation frequencies are required in order of 100 
25 MHz, This is normally achieved by an expensive phase- 
modulation "fiuorometers which are commonly' used in 
research labs. Long lifetime fluorescence requires low 
modulation frequencies in the range of 100 kHz. The 
design of a phase-modulation instrument for low 
30 modulation- frequencies is less expensive and can provide 
higher accuracy of measurements that similar devices 

7 



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PCT/US99/10874 



with high frequency. However, there are not presently 
widely available lifetime-sensitive fluorescence sensors 
that display long lifetimes other than those employing 
metal-ligand complexes and used in oxygen sensing as 
5 described above. 

Figs. 2a and Fig 2b show the expected frequency 
responses of phase angle and modulation of fluorescence 
that consist of a fraction of long lifetime and a 
fraction the short lifetime fluorescence. The values 

10 from 0 to 1 represent the fractional intensity of short 
lifetime fluorescence in the measured signal. There are 
observed great changes from 0 to about 90 degrees in 
phase angle and from 1 to 0 in modulation values upon 
changes of fractional contribution of fluorescence from 

15 both fluorophores. In addition the steeples part of the 
modulation value is equal the fractional intensity of 
short lifetime fluorescence. Thus fractional-dependent 
phase angle and/or modulation can be used to measure the 
intensity of a desired f luorophore in the sample using 

20 in most cases only one modulation frequency. The changes 
in fractional intensity can be induced by the analyte; 
(1) by affecting the absorption spectra (extinction 
coefficient and/or spectra shift), (2) by affecting the 
emission spectra (quantum yields and/or spectra shifts). 

25 There are many possibilities to optimize such a sensor 
probe by the choice of excitation wavelength/ emission 
band and relative concentration of used fluorophores. 

Referring again to Figs. 3a and 3b, the fractional 
intensity of the short fluorescence lifetime component 

30 in each case is the same for 0.15 in Fig. 3a and 0.5 in 
Fig. 3b. The important observations from these figures 

8 



WO 99/60383 PCT/US99/1 0874 

are that the phase angle and modulation below certain 
frequency are not sensitive to the value of short 
lifetime fluorescence in the sample. This is similar to 
the gating technique in the pulse method where, by 

5 applying a certain delay after pulse excitation, only 
the signal from long lifetime fluorescence is detected. 
In the phase-modulation technique it is impossible to 
measure only long the lifetime component. Analytical 
methods have been developed for background correction in 

10 phase-modulation f luorometry based on the measurements 
of the background sample or based on known intensity 
decay of background and it contribution in the sample 
signal. In the case presented in Fig. 3a and 3b the 
desired intensity of the long lifetime component can be 

15 obtained by measuring the phase and/or modulation at 
single modulation frequency regardless of intensity 
decay of the background or autofluorescence or scattered 
light until the mean lifetime is short enough compared 
to a long lifetime fluorophore. This feature can be used 

20 also to determine the anisotropy of the long lifetime 
component in turbid media with scattered light or with 
background fluorescence having a known value of 
anisotropy. This may find immediate application in 
detecting binding of high molecular weight 

25 macromolecules labeled with a metal-ligand complexes or 
in immunoassays. It is also important for- chemical 
sensing that changes in the lifetime due to presence of 
an analyte for short lifetime indicators have no effect 
of fractional intensity and thus on sensing of analyte 

30 concentration. 

Referring again to Figs 4 a and 4b, the most 

9 



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PCT/US99/10874 



important observation is from Fig 4b where the value of 
steeples part of modulation reflect the fractional 
intensity of the short lifetime component regardless on 
the value of the long lifetime component. Also, it is 
important that the choice of low modulation frequency 
depends mostly on the value of the long lifetime 
component but not on the value of short lifetime ' 
component. 

Examples 

The present invention is further illustrated with 
reference to the following examples. Example 1 
demonstrates the phase and modulation sensitivity when 
the fractional intensity of sample is varied by various 
relative concentrations of two dyes in the sample. 

Example 2 demonstrates the possibility to determine 
the intensity of flurophore of interest in presence of 
various araoun of background or autofluorescence from the 
solvent. 

Example 3 demonstrate how the sensing probe can be 
created when pH induced changes in fractional 
intensities of , a probe contained pH intensity sensitive 
indicator and long lifetime f luorophore con be measured 
by phase angle and modulation. 

Example 1 . . 

Two fluorophores have been chosen, one with a long 
lifetime fluorescence from met al-ligand complexes like 
[Ru(bpy) 2 dcbpyj? with a lifetime in glycerol of 1060 ns 
and the second with short lifetime like many organic 
fluorophores Texas Red Hydrazide with a lifetime of 3.4 

10 



WO 99/60383 PCT/US99/1 0874 

hs in glycerol. The two dyes were mixed at various 
relative concentrations to induce the various fractional 
intensities in the sample 

Fig/ 5a show the absorption spectra of long 

5 lifetime fluorophore [Ru(bpy) 2 dcbpy] 2+ and short lifetime 
fluorophore Texas Red Hydrazide (TRH) (solid lines and 
their mixture at concentrations specified in Figure. It 
is shown that any excitation wavelength shorter than 
about 640 nm will excite both f luorophores . The 

10 resulting fractional intensities from both fluorophores 
will be strongly dependent on the choice of excitation 
wavelength. One can imagine that value of extinction 
coefficient or shift in absorption spectrum wiir result 
in changes of fractional intensities that can be 

15 monitored with phase and/or modulation measurements. One 
excitation wavelength has been chosen as 488 nm (Argon- 
ion laser) . The total concentration of dyes were low to 
avoid the inner filter effects. The changes in 
absorption was induced by using various concentration 

20 combination of both fluorophores. 

Fig. 5b shows the emission spectra of 
[Ru(bpy) 2 dcbpy] 2+ and TRH at one selected concentration 
combination. The emission spectra overlap well and for 
phase and modulation measurements we used the long pass 

25 filter above 550 nm. 

Fig. 6 show the frequency responses of phaie angle 
for long lifetime fluorophore [Ru(bpy) 2 dcbpy] 2+ with a 
lifetime of 1060 ns and the short lifetime TRH of 3.4 ns 
when mixed together at a specified relative 

30 concentrations from 0 to 12.8. The obtained values for 
fractional intensities are in good agreement with those 

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PCT7US99/10874 



expected from steady-state measurements of full emission 
spectra. These experimental data are related to those 
simulated and discussed in Pig. 2a. r 

Fig. 7 show the frequency responses of modulation 
5 for long lifetime fluorophore [Ru (bpy) 2 dcbpy] 2+ with a 
lifetime of 1060 ns and the short lifetime TRH of 3.4 ns 
when mixed together at a specified relative 
concentrations from 0 to 12.8. These experimental data 
confirm that presented and discussed in Fig. 2b. 

10 

Example 2 

The purpose of this example was to demonstrate the 
calculation of intensity of long lifetime fluorophore in 
presence of background fluorescence from the solvent. 

15 Long lifetime fluorophore was the same as in Examplel 
[Ru(bpy) 2 dcbpy] 2 with a lifetime in glycerol of 1060 ns. 
The glycerol (from Fluka) displayed a background 
fluorescence that overlaps with the emission .- of 
ruthenium. In many applications the requirements are for 

20 very low dye concentration which posses the difficulties 
for increased background corrections. The increased 
contribution of background fluorescence from solvent was 
obtained by the dilutions of the ruthenium sample with 
glycerol. 

25 Fig. 8 show the emission spectra of ruthenium with 

decreased^ concentrations and also background 
fluorescence from used glycerol. The fractional 
intensity of glycerol calculated by integrating the 
spectra are following: 0.108, 0.379, 0,757, and 0.886 at 

30 ruthenium concentration of 740, 150, 29 and 6' nM. 

Fig. 9 show frequency responses of phase angle of 



WO 99/60383 PCT/US99/1 0874 

the samples with increased contributions of background 
fluorescence. The obtained values are in good agreement 
with those from steady-state measurements . The small 
difference are because of different excitation sources 

5 (xenon lamp and monochromator in steady-state, and Ar- 
ion laser in phase-modulation measurements) . It should 
be noted that phase angle is related only to fractional 
intensity at modulation frequencies lower than 1 MHz. 
The glycerol displayed a complex intensity decay with a 

10 mean lifetime shorter than 3.5 ns. These experimental 
data confirm that presented in Fig 3a where the short 
lifetime component do not contribute to changes in phase 
angle for certain low modulation frequencies . 

Fig 10 show frequency responses of modulation of 

15 the samples with increased contributions of background 
fluorescence. The steeples part of modulation indicate 
good separation between the fluorescence of ruthenium 
and that of glycerol, and can be easy used to determine 
the absolute intensity of the ruthenium. These results 

20 confirm that discussed in Fig. 3b. 

Example 3 

•' The goal of this example is to demonstrate the 
great opportunity of designing the fluorescence probe 

25 for measuring a large variety of chemical species where 
the change in fluorescence intensity can be 'obtained. 
For example we have chosen a pH intensity sensitive 
indicator Naphtofluorescein and the second dye with a 
long lifetime [Ru(phn) 3 J 2+ . The Naphtofluorescein as most 

30 of fluorescein dyes display pH sensitive absorption 
spectrum and decreased fluorescence quantum yield at 

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lower values of pH. To demonstrate the practical use of 
such sensor we used inexpensive blue LED as a excitation 
source. 

Fig. 11 shows the emission spectra of a mixture of 
5 ruthenium and Naphtof luorescein at various values of pH. 
The increased pH values affect the fractional 
intensities from both of dyes which is displayed as 
decreased fluorescence from the ruthenium and increased 
contribution from the Naphtof luorescein. The fractional 

10 intensities in the sample can be selected by the cutt 
off filter or by band pass filter. We have chosen use 
long pass filter above the 595 nm. The excitation source 
was a blue LED with a maximum intensity at 475 nm. 

Fig. 12 shows the frequency responses of phase 

15 angle of such pH sensor. There are observed remarkably 
large changes in phase angle at modulation induced by 
the pH of a sample. The pH phase-based sensing can be 
performed at low modulation frequencies in spite of very 
short lifetime of Naphtof luorescein of about 0.45 ns 

20 frequencies below 10 MHz . 

Fig. 13 shows large changes in modulation induced 
by pH of the sample. There is a wide range of modulation 
frequencies where modulation value is related only to 
the pH value even not to modulation frequency. This is 

25 because the difference in lifetimes of ruthenium and 
Naphtof luorescein is very large about 1000-fo~ld. It is 
again important to note that long lifetime value 
determines the useful low modulation frequency for 
sensing. 

30 Fig. 14 shows pH-dependent phase angle for several 

modulation frequencies. It should be noted the magnitude 

14 



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of phase angle changes up to 69 deg (see values in the 
brackets) . This is remarkably pH sensor, which allows 
measurements the pH changes as small as of 0.0035 of pH 
. unit assuming that phase angle can be measured with an 
5 accuracy of 0.1 deg (from curve at 2200 kHz in the range 
from pH 6 to 8) . Also choosing the modulation frequency 
allow to shift the apparent pKa, in presented case from 
6.41 to 7.24. 

Fig. 15 shows pH-dependent modulations for several 
10 modulation frequencies. The pH induced changes in 
modulation ( values in the brackets) are large and 
significantly depends on the choice of modulation 
frequency. The apparent pKa is slightly dependent on 
modulation frequency . 
15 The above description is intended to be 

illustrative of the present invention, which is intended 
to be limited only by the claims that follow. 

20 : 



25 



30 

15 



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Claims 

10 What is claimed is: 



1. A method for performing an assay for the presence 
or concentration of an analyte in a sample, the,, 
15 method comprising: 

a, contacting the sample with a fluorescent probe 
that, when in the presence of the analyte and 
illuminated with activating radiation, emits 

20 fluorescent radiation at an intensity that is 

related to the presence or concentration of 
the analyte, the fluorescent radiation having 
a first lifetime that is substantially 
unchanged by the presence or concentration of 

25 the analyte in the sample; 



b. illuminating with modulated activating 
radiation of one or more frequencies or 
30 amplitudes, or both, the fluorescent probe and 

a fluorescent material that emits, in response 

16 



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PCT/US99/10874 



10 



20 



to said activating radiation, fluorescent 
radiation having a second fluorescent lifetime 
that is substantially unchanged by the 
presence or concentration of the analyte and 
that has an intensity that is substantially 
unchanged by the presence or concentration of 
the analyte and wherein the second fluorescent 
lifetime is longer or shorter than the first 
fluorescent lifetime; 



c. sensing change in phase angle or modulation, 
or both, of the mixed emissions from the 
fluorescent probe and fluorescent material 
15 upon such contacting; and 



d. determining from such change the presence or 
concentration of the analyte. 



The method of Claim 1 wherein the sample is 
contacted by the fluorescent material. 



25 3. The method of Claim 1 wherein the sample is 

contacted with a matrix material that supports the 
fluorescent probe and, optionally, the fluorescent 
material. 



30 

4. 



The method of Claim 1 wherein the sample , is mixed 

17 



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PC17US99/10874 



with the fluorescent probe and, optionally, with 
the fluorescent material. 

An assay device for use in determining the presence 
or concentration of an analyte in a sample, the 
device comprising 

a. a fluorescent probe that, when in the presence of 
the analyte and illuminated with activating 
radiation, emits fluorescent radiation at an 
intensity that is related to the presence or 
concentration of the analyte, the fluorescent 
radiation having a first lifetime that is 
substantially unchanged by the presence or 
concentration of the analyte in the sajnple; 

b. a fluorescent material that emits, in response to 
said activating radiation, fluorescent radiation 
having a second fluorescent lifetime that is 
substantially unchanged by the presence or 
concentration of the analyte and that has an 
intensity that is substantially unchanged by the 
presence or concentration of the analyte and 
wherein the second fluorescent lifetime is longer 
or shorter than the first fluorescent lifetime ; 
and 

c. a support member adapted for supporting the probe 
and, optionally, the material in contact with the 
sample during illumination of the probe and the 

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PCT/US99/10874 



6. 

5 

1. 

10 
15 
20 
25 



material by the activating radiation. 

The device of Claim 5 wherein the support member 
comprises a polymeric matrix. 



An assay composition for use in assaying for the 
presence or concentration of an analyte in a 
sample, the composition comprising: 

a. a fluorescent probe that, when in the presence 
of the analyte and illuminated with activating 
radiation, emits fluorescent radiation at an 
intensity that is related to the presence or 
concentration of the analyte, the fluorescent 
radiation having a first lifetime that is 
substantially unchanged by the priesence or 
concentration of the analyte in the sample; and 

b. a fluorescent material that emits, in response 
to said activating radiation, fluorescent 
radiation having a second fluorescent lifetime 
that is substantially unchanged by the presence 
or concentration of the analyte and that has an 
intensity that is substantially unchanged by the 
presence or concentration of the analyte and 
wherein the second fluorescent lifetime is 
longer or shorter than the first fluorescent 

19 



WO 99/60383 



PCT/US99/10874 



lifetime, 

8. A kit for use in performing an assay for the 

presence or concentration of an analyte, the kit 
5 comprising: 

a. a container containing a fluorescent probe 

that, when in the presence of the analyte and 
illuminated with activating radiation, emits 

10 fluorescent radiation at an intensity that is 

related to the presence or concentration of 
the analyte, the fluorescent radiation having 
a first lifetime that is substantially 
unchanged by the presence or concentration of 

15 the analyte in the sample; and 



b. a container containing a fluorescent material 
that emits, iii response to' said activating 
radiation, fluorescent radiation having a 
second fluorescent lifetime that is 
substantially unchanged by the presence or 
concentration of the analyte and that has an 
intensity that is substantially unchanged by 
the presence or, concentration of the analyte 
and wherein the second fluorescent litetime is 
\ longer or shorter than the first fluorescent 
lifetime ♦ 



20 



25 



30 



20 



WO 99/60383 



1/20 



PCT7US99/10874 




Modulation Frequency (MHz) 



Fig. 1a 



WO 99/60383 



2/20 



PCT/US99/10874 



1E-3 0.01 0.1 1 10 100 1000 




Frequency ( MHz) 



Fig. 1b 



WO 99/60383 



3/20 



PCT/US99/10874 




0.1 1 10 100 

Modulation Frequency (MHz) 



Fig. 2a 



I 



WO 99/60383 PCT/US99/10874 

4/20 




0.1 1 10 100 

Frequency (MHz) 



Fig. 2b 



WO 99/60383 PCI7US99/1 0874 

5/20 




Fig. 3a 



WO 99/60383 



PCT/US99/10874 



6/20 



1.0 




Modulation Frequency (MHz) 



Fig. 3b 



WO 99/60383 



7/20 



PCT/US99/10874 




Modulation Frequency (MHz) 



Fig. 4a 



WO 99/60383 PCT/US99/10874 

8/20 




WO 99/60383 PCT/US99/10874 

9/20 




400 450 500 550 600 650 



Wavelength (nm) 
Serie B ct,* o.ai tvh* o.oozl, (ifes*^ 

Dyes were in glycerol (Fluka). 

Concentration calculated base on extinction coefficients : 

Ru- 12,000 Nfcm' 1 , [Evald] 

TRH- 80,000 Nfcrn* 1 [MP] 

Set,..- 



WO 99/60383 



10/20 



PCT/US99/10874 



8 
7 
6 
5 
4 
3 
2 
1 
0 



Ru + TRH (750 + 375 nM) 
Exc 488 nm, in glycerol, t=22 C 

TRH (375 nM) 



Ru(750nM) 




550 



600 650 700 

Wavelength (nm) 



750 



Fractional intensity in the mixture (serie C): 
glyc. - 0.065 

Ru - 0.439? os>-o.^oifZ j 

TRH - 0.613 J <*1 **:°oW :M lAI" ] , 

1 ob o.si* I r 

If separately it t is about 11% more than in mixture. 



5 h 



WO 99/60383 



11/20 



PCT/US99/10874 




0.01 0.1 1 10 100 



Frequency (MHz) 



Fig. 6 



WO 99/60383 



12/20 



PCT/US99/10874 




Modulation Frequency (MHz) 



Fig. 7 



WO 99/60383 



13/20 



PCT/US99/10874 




Fig. 8 



I 



I 



WO 99/60383 PCT/US99/10874 

14/20 




Frequency (MHz) 



Fig. 9 



WO 99/60383 



15/20 



PCT/US99/10874 




Modulation Frequency (MHz) 



Fig. 10 



WO 99/60383 



PCT/US99/10874 



16/20 



160 
140 
120 



[Rufphny 2 * 
Long lifetime dye 
Mixtures ✓ " " n 



( ) 



Naphtofluorescein 



/ \ pH indicator 

> \ 
/ \ 
/ \ 
/ \ 



/ pH6.0 \ I 




550 600 650 700 750 
Emission Wavelength (nm) 



Fig. 11 



WO 99/60383 



17/20 



PCT/US99/10874 




WO 99/60383 



18/20 



PCT/US99/10874 




Modulation Frequency (MHz) 



Fig. 13 



WO 99/60383 



19/20 



PCT/US99/10874 




Fig. 14 



WO 99/60383 



20/20 



PCT/US99/10874 



1.0 




pH 
Fig. 15 



INTERNATIONAL SEARCH REPORT 



International application No. 
PCT/US99/10874 



. CLASSIFICATION OF SUBJECT MATTER 
IPC(6) : GOIN 21/64, 15/14 
US CL :Please Sec Extra Shed. 
According to International Patent Classification (IPC) or to both national classification and IPC 



FIELDS SEARCHED 



Minimum documentation searched (classification system followed by classification symbols) 
U.S. : 250/461.2, 458.1, 461.1, 459.1, 461.2, 302; 436/172, 527, 521, 169, 501 



Documentation searched other than minimum documentation to the extent that such documents arc included in the fields searched 
NONE 



Electronic data base consulted during the international search (name of data base and, where practicable, search terms used) 
CAPLUS, WPIDS, USPAT, DIALOG, MEDLINE 

FLUORESC, PHASE, MODULATE, FREQUENT, PROBE, AMPLITUDE, LIFETIME, FLUORMET, POLYMERIC 
MATRI. : _ 



DOCUMENTS CONSIDERED TO BE RELEVANT 



Category* 



Citation of document, with indication, where appropriate, of the relevant passages 



Relevant to claim No. 



WO 92/07245 Al (THE UNIVERSITY OF MARYLAND) 30 April 
1992, pages 3-43. 

WO 92/13265 Al (THE UNIVERSITY OF MARYLAND) 06 
August 1992, whole document, especially pages 9-48. 

US 5,270,548 A (STEINKAMP) 14 December 1993, whole 
document especially columns 3-10. 

US 5,315,122 A (PINSKY et al) 24 May 1994, column 2, lines 59- 
68. 



1-8 



1-8 



1-7 



1-7 



| | Further documents are listed in the continuation of Box C. Q See patent family annex. 



•L" 



•o* 



Special cate»,ooae of citad <Jooaa«itr 

document dafknne, the general atete of the art which » 
to be of particular reliance 

r document published on or after the intrmstion 

tkfa mwt throw doubtt on priority craon(s) or which a 
cited to eetabfoh the publication date of another citation or <rfbar 

I (as apacifiad) 1 



tpubnebeda 



tpub&bed prior to tha 



(date >XT 



filinf date hot later than 



tetardoo r 

_ i hut chad to 

tha priocipte or theory uadartyin$ "th* iirraotioo 

documant of particular relevance; tha clainad arrantion 
considered novel or cannot ba coosidared to mrorre as 
whan tha document ia tekao alone 



documant of particular ralaranca; tha claimed invention « 
cooaadared to inroKa an rarentrra atep whan the doc 
combined with one or nor* other eucfa document*, tnch cot 
beans obvioua to a parson skilled in the art 

docuaeeut mexabar of tha asm a patent faraUy 



the 

t b 



Date of the actual completion of the international search 
04 AUGUST 1999 



Name and mailing address of the ISA/US 
Corammwocr of Patenta and Trademarks 

Box per 

Washington, DC 20231 
Facsimile No. (703) 305-3230 



Date of m ailing of the international search report 

30AUG1959 



Authorized officer 

PADMA BASKAR 
Telephone No. (703) 



308-0196 Vj 



Form PC17ISA/210 (second. sheet)(July 1992)* 



INTERNATIONAL SEARCH REPORT 



International application No. 
PCT/US99/10874 



A. CLASSIFICATION OF SUBJECT MATTER: 
USCL : 

250/461.2, 458.1, 461.1, 459.1, 461.2, 302; 436/172, 527, 521, 169, 501 




Form PCT/1SA/210 (extra sheet)(July 1992)*